PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g011660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 162aa    MW: 18669.4 Da    PI: 4.2904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g011660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1788136354
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Csa07g011660.1  88 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 136
                     9*******.**********44465..*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-1287134IPR001471AP2/ERF domain
PROSITE profilePS5103221.73387145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2987146IPR001471AP2/ERF domain
SMARTSM003802.2E-3587151IPR001471AP2/ERF domain
PRINTSPR003672.2E-108899IPR001471AP2/ERF domain
CDDcd000181.13E-2788146No hitNo description
SuperFamilySSF541718.5E-2288147IPR016177DNA-binding domain
PRINTSPR003672.2E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEYSQSPMYS SPSSWSSSQE SLLWNESCFF DQSSDPQSFL CPNYHDYSDD FFSFESSEMM  60
VKEEIQNSEV SNSEEEEKVG IDEEERSYRG VRKRPWGKFA AEIRDSTRNG IRVWLGTFDK  120
AEEAALAYDQ AAFATKGSLA TLNFPVEVVR ESLKKMENRR W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-2786148466ATERF1
2gcc_A2e-2786148466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065931e-159AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence.
GenBankAY0704431e-159AY070443.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankAY0965631e-159AY096563.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankCP0026851e-159CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414162.11e-114PREDICTED: ethylene-responsive transcription factor 15
SwissprotQ8VYM04e-89ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLD7LD077e-87D7LD07_ARALL; Putative uncharacterized protein
STRINGAT2G31230.11e-86(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-47ethylene-responsive element binding factor 15